Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11487077_11487985_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11487077 - 11487985

Intron Length:

909

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGCTTGGC

5'SS Class:

major

3'SS Sequence:

CTTGTGCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTCAT

U12 Branch Point Sequence:

GTTTCATTGATC

Flanking Amino Acid:

ALENFPAGDSGESNPPSAVP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.47

1.1

59.6

39.8

Major BPS

82.2

0.8

1.1

85.7

34.9

Major PPT

79.7

0.67

0.9

37.4

Minor 5ss

26.6

-2.7

3.2

35.4

41.1

Minor BPS

66.6

0.51

1.6

75.86

34.2

Associated Gene:

Gene:

SHLD1

Ensembl Gene ID:

ENSAPLG00000021416

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035608

11485568 - 11488016

2449