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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11487077_11491736_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11487077 - 11491736
Intron Length:
4660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTGTG
5'SS Class:
major
3'SS Sequence:
CTTGTGCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GTTTCATTGATC
Flanking Amino Acid:
QGTAVRGGESNPPSAVP
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
70.7
39.5
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
79.7
0.67
0.9
73
37.4
Minor 5ss
42.5
-0.8
3.1
57.9
46.8
Minor BPS
66.6
0.51
1.6
75.86
34.2

Associated Gene:

Gene:
SHLD1
Ensembl Gene ID:
ENSAPLG00000021416
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025072
11485568 - 11514519
28952