Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_1148717_1159096_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1148717 - 1159096

Intron Length:

10380

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCCAT

5'SS Class:

strong_major

3'SS Sequence:

GGCTTTTCCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTGAT

U12 Branch Point Sequence:

TATTTGATAACA

Flanking Amino Acid:

YMSAQDGKAKTHISRLPPGA

Intron Amino Acid Position:

391

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.3

0.93

0.9

77.9

38.6

Major BPS

87.6

0.93

0.8

77.4

37.3

Major PPT

74.3

0.55

0.9

68.1

37.6

Minor 5ss

39.5

-1.2

3.2

55.8

48.4

Minor BPS

52.6

0.08

2.3

73.15

38.5

Associated Gene:

Gene:

TASP1

Ensembl Gene ID:

ENSAPLG00000011487

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038158

1148624 - 1230576

81953

ENSAPLT00000012059

1148395 - 1230576

82182