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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_114882768_114883921_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
114882768 - 114883921
Intron Length:
1154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAAAG
5'SS Class:
major
3'SS Sequence:
CCTACTTCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTCCCCTACTT
Flanking Amino Acid:
RILWGNNHFFRLNLPKKKKK
Intron Amino Acid Position:
542

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
65.1
40.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
67.3
0.39
1
67.3
32.7
Minor 5ss
31.1
-2.2
3.2
39.5
46
Minor BPS
58
0.33
2
82.26
39.1

Associated Gene:

Gene:
KIF13B
Ensembl Gene ID:
ENSAPLG00000005429
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038680
114814550 - 114931343
116794
ENSAPLT00000005668
114814550 - 114931343
116794