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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_114884113_114884953_F

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
114884113 - 114884953
Intron Length:
841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
AACCTCTGCCTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CATTTTTTAACC
Flanking Amino Acid:
EVTMKALGSNDPMQSILQSL
Intron Amino Acid Position:
606

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
71.6
38.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
58.6
0.19
0.9
50.5
38.3
Minor 5ss
34
-1.8
2.9
40.9
39.4
Minor BPS
73.7
0.72
1.2
74.61
36.2

Associated Gene:

Gene:
KIF13B
Ensembl Gene ID:
ENSAPLG00000005429
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038680
114814550 - 114931343
116794
ENSAPLT00000005668
114814550 - 114931343
116794