About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_114890733_114891655_F


Intron Information:

Intron Rank:
22

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
114890733 - 114891655

Intron Length:
923

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAC|GTAATTATT

5'SS Class:
major

3'SS Sequence:
CTGTCATTTGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TAATCAT

U12 Branch Point Sequence:
TAATCATTAACC

Flanking Amino Acid:
RCMVVFDHCNEFSVNISEDF

Intron Amino Acid Position:
930

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
72.9
0.54
1.3
83.7
34.8

Major BPS
80.4
0.76
1
80.3
31.8

Major PPT
79.5
0.66
0.9
73.3
36

Minor 5ss
43.1
-0.8
2.8
59.8
37.9

Minor BPS
72.7
0.69
1.5
78.39
36.1

Associated Gene:

Gene:
KIF13B

Ensembl Gene ID:

Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

114814550 - 114931343
116794

114814550 - 114931343
116794