About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_114903492_114905124_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
114903492 - 114905124
Intron Length:
1633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGCTT
5'SS Class:
major
3'SS Sequence:
TCCCTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
AAAGCAAGAAAT
Flanking Amino Acid:
RICVNVYGRQGFAQSFLRRM
Intron Amino Acid Position:
1281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
68.5
42.1
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
74.5
0.55
0.7
68.2
25.5
Minor 5ss
42.1
-0.9
3.5
64.4
47
Minor BPS
39.6
-0.7
1.9
53.78
40.1

Associated Gene:

Gene:
KIF13B
Ensembl Gene ID:
ENSAPLG00000005429
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038680
114814550 - 114931343
116794
ENSAPLT00000005668
114814550 - 114931343
116794