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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_114916021_114916946_F

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
114916021 - 114916946
Intron Length:
926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGAGCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CATTTTTCAATT
Flanking Amino Acid:
SGQQNHSPDAGLGSLAASYL
Intron Amino Acid Position:
1446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72.7
36.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
79
0.65
0.9
74.9
34.2
Minor 5ss
32
-2.1
3.6
48.4
47.3
Minor BPS
59.4
0.37
1.5
72.41
39.3

Associated Gene:

Gene:
KIF13B
Ensembl Gene ID:
ENSAPLG00000005429
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038680
114814550 - 114931343
116794
ENSAPLT00000005668
114814550 - 114931343
116794