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Intron Name: Anas_platyrhynchos_platyrhynchos_3_11491974_11514423_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

11491974 - 11514423

Intron Length:

22450

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGTCTG

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCTTTGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTAAC

U12 Branch Point Sequence:

AAGCTCTTAACT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

68.8

43.8

Major BPS

77.1

0.67

77.9

32.2

Major PPT

88.5

0.87

0.6

22.5

Minor 5ss

31.9

-2.1

2.9

41.8

Minor BPS

70.3

0.72

1.2

76.97

39.1

Associated Gene:

Gene:

SHLD1

Ensembl Gene ID:

ENSAPLG00000021416

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025072

11485568 - 11514519

28952