About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_114926143_114927688_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
114926143 - 114927688
Intron Length:
1546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAG
U12 Branch Point Sequence:
CGGTCACTGACT
Flanking Amino Acid:
IDASAAKIKQISQEEVGKRP
Intron Amino Acid Position:
1512

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
75.3
40.8
Major BPS
55.5
0.14
1.5
65.8
41
Major PPT
85.1
0.79
0.8
80.1
31.8
Minor 5ss
39.7
-1.2
2.8
49.5
46.5
Minor BPS
48
-0
2
66.02
44.3

Associated Gene:

Gene:
KIF13B
Ensembl Gene ID:
ENSAPLG00000005429
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038680
114814550 - 114931343
116794
ENSAPLT00000005668
114814550 - 114931343
116794