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Intron Name: Anas_platyrhynchos_platyrhynchos_3_114955180_114957736_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

114955180 - 114957736

Intron Length:

2557

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTGCAT

5'SS Class:

major

3'SS Sequence:

TCCGCCCGTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAACCAC

U12 Branch Point Sequence:

TTCTCTTTTCTC

Flanking Amino Acid:

VTLPSHTFLTG*

Intron Amino Acid Position:

518

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.4

0.5

1.1

64.1

41.4

Major BPS

49.1

-0

1.3

58.8

37.5

Major PPT

67.8

0.4

61.2

Minor 5ss

38.6

-1.3

3.3

55.9

48.3

Minor BPS

42.1

-0.6

3.5

65.55

Associated Gene:

Gene:

HMBOX1

Ensembl Gene ID:

ENSAPLG00000006003

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041887

114955025 - 115014607

59583