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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_114956156_114958472_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
114956156 - 114958472
Intron Length:
2317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGAAAA
5'SS Class:
major
3'SS Sequence:
AATTTCTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
AATTTCTTCATA
Flanking Amino Acid:
SKLHHSRHTQ*
Intron Amino Acid Position:
491

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
71.6
33
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
75.1
0.56
0.8
69.7
35.8
Minor 5ss
41.3
-1
2.9
53.1
44.1
Minor BPS
60.6
0.33
1.7
70.3
36.1

Associated Gene:

Gene:
HMBOX1
Ensembl Gene ID:
ENSAPLG00000006003
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026021
114955025 - 115014607
59583