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Intron Name: Anas_platyrhynchos_platyrhynchos_3_114957818_114958472_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

114957818 - 114958472

Intron Length:

655

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTATGAAAA

5'SS Class:

major

3'SS Sequence:

TTAAATTCTCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TCTTTTTTAAAT

Flanking Amino Acid:

SKLHHSRHTQSKEYPFPHSE

Intron Amino Acid Position:

491

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.9

0.54

1.1

71.6

Major BPS

90.4

0.7

90.2

19.3

Major PPT

71.6

0.49

0.9

63.1

43.5

Minor 5ss

41.3

-1

2.9

53.1

44.1

Minor BPS

73.3

0.81

1.3

84.29

36.6

Associated Gene:

Gene:

HMBOX1

Ensembl Gene ID:

ENSAPLG00000006003

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041887

114955025 - 115014607

59583