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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_114958911_114960605_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
114958911 - 114960605
Intron Length:
1695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAATGTAT
5'SS Class:
major
3'SS Sequence:
GCTTTTTTCGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCAGAT
U12 Branch Point Sequence:
ATCAGATAAATT
Flanking Amino Acid:
RKEIKRRANIEAAILESHGI
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
68.8
38.3
Major BPS
65.3
0.38
1
60.7
37.6
Major PPT
72.7
0.51
1
74.5
34
Minor 5ss
39
-1.2
3.4
56.3
47.9
Minor BPS
42.3
-0.5
2.2
59.8
43.9

Associated Gene:

Gene:
HMBOX1
Ensembl Gene ID:
ENSAPLG00000006003
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041887
114955025 - 115014607
59583
ENSAPLT00000026021
114955025 - 115014607
59583
ENSAPLT00000006249
114955025 - 115014607
59583