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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_114960702_114962815_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
114960702 - 114962815
Intron Length:
2114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
GTTACTTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
AATCTTTTATCA
Flanking Amino Acid:
NACNAVIQKPGKKLSDLERV
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
71.1
0.48
0.9
65.4
36.1
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
54.8
0.15
1.5
63.94
36.1

Associated Gene:

Gene:
HMBOX1
Ensembl Gene ID:
ENSAPLG00000006003
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006249
114955025 - 115014607
59583
ENSAPLT00000041887
114955025 - 115014607
59583
ENSAPLT00000026021
114955025 - 115014607
59583