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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_114962899_114983028_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
114962899 - 114983028
Intron Length:
20130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GATTTCTGAAAA
Flanking Amino Acid:
WRKECLAVMESYFNENQYPD
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.6
1.1
0.7
87.5
21.2
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
78.4
0.64
0.7
72
26.1
Minor 5ss
40.5
-1.1
2.8
52
45.2
Minor BPS
59.5
0.29
1.5
67.77
37.6

Associated Gene:

Gene:
HMBOX1
Ensembl Gene ID:
ENSAPLG00000006003
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041887
114955025 - 115014607
59583
ENSAPLT00000026021
114955025 - 115014607
59583
ENSAPLT00000006249
114955025 - 115014607
59583