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Intron Name: Anas_platyrhynchos_platyrhynchos_3_114989992_114999595_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

114989992 - 114999595

Intron Length:

9604

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAGCT

5'SS Class:

strong_major

3'SS Sequence:

TTGTTTCCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGACCAA

U12 Branch Point Sequence:

TTTTCTCTTCCT

Flanking Amino Acid:

ISQAVVAQVTGISQSRISHW

Intron Amino Acid Position:

197

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.6

0.98

0.8

81.6

Major BPS

-0.4

1.2

44.6

38.1

Major PPT

85.5

0.8

77.9

36.6

Minor 5ss

33.1

-1.9

3.4

48.3

47.4

Minor BPS

41.8

-0.5

3.7

80.68

41.1

Associated Gene:

Gene:

HMBOX1

Ensembl Gene ID:

ENSAPLG00000006003

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041887

114955025 - 115014607

59583

ENSAPLT00000026021

114955025 - 115014607

59583

ENSAPLT00000006249

114955025 - 115014607

59583