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Intron Name: Anas_platyrhynchos_platyrhynchos_3_114999682_115001682_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

114999682 - 115001682

Intron Length:

2001

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTTAGTAGA

5'SS Class:

strong_major

3'SS Sequence:

TTTGTTTTGGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTGT

U12 Branch Point Sequence:

TTTTTTTTGTTT

Flanking Amino Acid:

DIDDKVEELMRRDSSVIKEE

Intron Amino Acid Position:

168

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

1.1

79.2

36.3

Major BPS

38.1

-0.7

4.3

71.7

44.6

Major PPT

78.5

0.64

0.9

77.2

37.1

Minor 5ss

31.5

-2.1

2.4

34.9

40.7

Minor BPS

46.8

-0.1

3.4

81.5

34.7

Associated Gene:

Gene:

HMBOX1

Ensembl Gene ID:

ENSAPLG00000006003

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041887

114955025 - 115014607

59583

ENSAPLT00000026021

114955025 - 115014607

59583

ENSAPLT00000006249

114955025 - 115014607

59583