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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115072497_115076709_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
115072497 - 115076709
Intron Length:
4213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TCGATCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATGTTCTGAAAA
Flanking Amino Acid:
ASMWKNKEVQRLLPAPLKDA
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
82.1
31
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
78.9
0.65
0.9
72.8
37.3
Minor 5ss
32.6
-2
3.1
42.1
45
Minor BPS
59.2
0.28
1.5
67.79
38.2

Associated Gene:

Gene:
INTS9
Ensembl Gene ID:
ENSAPLG00000006167
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006427
115060197 - 115122055
61859