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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115076831_115078604_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115076831 - 115078604
Intron Length:
1774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
CTGTGCGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
GCTCTCTCAAAT
Flanking Amino Acid:
IQLVGYSQKIELFGAVQVTP
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
76.1
32.8
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
73.3
0.52
1
69.1
41.8
Minor 5ss
37.4
-1.4
2.9
51.7
39.2
Minor BPS
51.7
0.13
1.7
67.7
42.5

Associated Gene:

Gene:
INTS9
Ensembl Gene ID:
ENSAPLG00000006167
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006427
115060197 - 115122055
61859