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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115078740_115083665_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115078740 - 115083665
Intron Length:
4926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGCCA
5'SS Class:
major
3'SS Sequence:
TACTCTGTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATCTCACT
Flanking Amino Acid:
GSSLLTTHPQPMDQASLKNS
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
56.7
42.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.5
0.66
0.9
76.6
37.1
Minor 5ss
29.3
-2.4
3.4
39.7
45.8
Minor BPS
50.3
0.09
2.2
81.52
40

Associated Gene:

Gene:
INTS9
Ensembl Gene ID:
ENSAPLG00000006167
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006427
115060197 - 115122055
61859