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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115092034_115100237_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115092034 - 115100237
Intron Length:
8204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTAAT
U12 Branch Point Sequence:
AATGTCTGAATT
Flanking Amino Acid:
LPEPPFPHAELIQTNKLKHY
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
66.7
0.41
1.4
69.7
44.2
Major PPT
97.3
1.06
0.5
96.6
11.5
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
58.3
0.34
1.5
72.02
39.1

Associated Gene:

Gene:
INTS9
Ensembl Gene ID:
ENSAPLG00000006167
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006427
115060197 - 115122055
61859