About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115100410_115105549_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
115100410 - 115105549
Intron Length:
5140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GTATTTTCAACA
Flanking Amino Acid:
KSSLNTVIFTEPDFSYLDAL
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
93.6
0.98
0.6
92.4
17.8
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
61.2
0.35
1.5
68.91
37.2

Associated Gene:

Gene:
INTS9
Ensembl Gene ID:
ENSAPLG00000006167
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006427
115060197 - 115122055
61859