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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115130221_115130482_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115130221 - 115130482
Intron Length:
262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGACT
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GCTGCAGTGACC
Flanking Amino Acid:
SHLTRKPPIKVTSRWTFRCP
Intron Amino Acid Position:
851

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
76.1
39.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.6
0.71
0.7
75.8
26.2
Minor 5ss
33.5
-1.9
3.5
49
47
Minor BPS
43.6
-0.5
2.3
55.33
43.2

Associated Gene:

Gene:
EXTL3
Ensembl Gene ID:
ENSAPLG00000006510
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021708
115130011 - 115157441
27431
ENSAPLT00000019026
115129315 - 115174007
44693
ENSAPLT00000006747
115129315 - 115153551
24237
ENSAPLT00000024386
115129096 - 115159292
30197