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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115130612_115130982_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115130612 - 115130982
Intron Length:
371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
GTTCCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGAGCAA
U12 Branch Point Sequence:
ATCCCCTCGAGC
Flanking Amino Acid:
VLTGAAFFHKYYAYLYSYVM
Intron Amino Acid Position:
808

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
40.8
-0.5
1.3
41.1
39.7
Major PPT
83.1
0.75
0.8
77
31.6
Minor 5ss
29.7
-2.3
3
40.4
45.3
Minor BPS
47.5
-0.2
1.9
57.88
41

Associated Gene:

Gene:
EXTL3
Ensembl Gene ID:
ENSAPLG00000006510
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021708
115130011 - 115157441
27431
ENSAPLT00000019026
115129315 - 115174007
44693
ENSAPLT00000006747
115129315 - 115153551
24237
ENSAPLT00000024386
115129096 - 115159292
30197