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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115133213_115151329_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115133213 - 115151329
Intron Length:
18117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTCCCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
ATTTGCACACCG
Flanking Amino Acid:
LWPDIGVPIMVVRTEKNSLN
Intron Amino Acid Position:
717

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
73.4
37.3
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
71.9
0.49
0.9
66.5
35.7
Minor 5ss
33
-1.9
2.9
37.5
41.1
Minor BPS
41.6
-0.7
2.3
55.02
45.8

Associated Gene:

Gene:
EXTL3
Ensembl Gene ID:
ENSAPLG00000006510
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006747
115129315 - 115153551
24237
ENSAPLT00000024386
115129096 - 115159292
30197
ENSAPLT00000021708
115130011 - 115157441
27431
ENSAPLT00000019026
115129315 - 115174007
44693