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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115157656_115159142_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
115157656 - 115159142
Intron Length:
1487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTCATTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCTATTTGATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.8
71.2
34.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81
0.7
0.8
78.7
34.1
Minor 5ss
24.3
-3
3.1
28.4
43.8
Minor BPS
64.2
0.53
1.5
79.4
37.2

Associated Gene:

Gene:
EXTL3
Ensembl Gene ID:
ENSAPLG00000006510
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024386
115129096 - 115159292
30197