About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115239878_115240489_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
115239878 - 115240489
Intron Length:
612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCGTC
5'SS Class:
major
3'SS Sequence:
TCTCCCCAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTCTCCCCAACC
Flanking Amino Acid:
HGSLHRSRDGRYTPCSYRGV
Intron Amino Acid Position:
596

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
67
39
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
66.9
0.38
0.9
59.7
35.8
Minor 5ss
35.9
-1.6
3.5
50.6
46.1
Minor BPS
53.9
0.1
2
67.5
44

Associated Gene:

Gene:
FZD3
Ensembl Gene ID:
ENSAPLG00000014664
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027406
115238664 - 115284925
46262
ENSAPLT00000015288
115238664 - 115284925
46262