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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115240724_115242178_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
115240724 - 115242178
Intron Length:
1455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
ATTCAAATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTAGCATTAACT
Flanking Amino Acid:
ASFFHGRRKKEVVNESRQVL
Intron Amino Acid Position:
518

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
80.7
33.7
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
71.9
0.49
1
63.9
40.8
Minor 5ss
37.5
-1.4
3
47.9
41.8
Minor BPS
70.3
0.72
1.7
86.33
39.2

Associated Gene:

Gene:
FZD3
Ensembl Gene ID:
ENSAPLG00000014664
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027406
115238664 - 115284925
46262
ENSAPLT00000015288
115238664 - 115284925
46262