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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115261418_115263091_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
115261418 - 115263091
Intron Length:
1674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTTCTTGTAAAT
Flanking Amino Acid:
VSWPEDMECTRFPDCDEPYP
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
79.3
31.1
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
84.2
0.77
0.7
77.2
31.5
Minor 5ss
33.2
-1.9
2.8
39
46.4
Minor BPS
52.2
0.15
2.1
77.95
38.5

Associated Gene:

Gene:
FZD3
Ensembl Gene ID:
ENSAPLG00000014664
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027406
115238664 - 115284925
46262
ENSAPLT00000015288
115238664 - 115284925
46262