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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115301115_115308535_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115301115 - 115308535
Intron Length:
7421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAACTTT
5'SS Class:
major
3'SS Sequence:
ACTCCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
TTTCTCAGAACC
Flanking Amino Acid:
EERRALLGKWFDKWTDGQRR
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
72.1
40.4
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
83.3
0.75
0.8
80.5
30.7
Minor 5ss
48.7
-0.1
3
64.7
46.7
Minor BPS
56.9
0.2
1.7
73.87
36

Associated Gene:

Gene:
FBXO16
Ensembl Gene ID:
ENSAPLG00000014547
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031559
115294669 - 115328724
34056
ENSAPLT00000015179
115294669 - 115325850
31182
ENSAPLT00000039008
115295397 - 115328724
33328