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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115308743_115309900_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
115308743 - 115309900
Intron Length:
1158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGAA
5'SS Class:
strong_major
3'SS Sequence:
TGGGCACCCACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
CTGCTCTTATAC
Flanking Amino Acid:
DPRSLCRCAQVSWHWKYLSE
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
73.7
30.1
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
59.8
0.22
1
50.8
38.4
Minor 5ss
29.1
-2.4
3.4
37.8
47
Minor BPS
48.3
-0.1
1.7
56.35
42.1

Associated Gene:

Gene:
FBXO16
Ensembl Gene ID:
ENSAPLG00000014547
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039008
115295397 - 115328724
33328
ENSAPLT00000031559
115294669 - 115328724
34056
ENSAPLT00000015179
115294669 - 115325850
31182