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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115310066_115310901_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115310066 - 115310901
Intron Length:
836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTCC
5'SS Class:
major
3'SS Sequence:
TGTCTCTTATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTCTCTTATTA
Flanking Amino Acid:
VKELHVTRPKTPPKDEFVVI
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
70.9
33.7
Major BPS
100
1.24
0.5
100
0
Major PPT
74.8
0.56
0.9
74.7
34.8
Minor 5ss
46.9
-0.3
2.5
62.3
42.5
Minor BPS
59.7
0.3
1.6
69.16
37.3

Associated Gene:

Gene:
FBXO16
Ensembl Gene ID:
ENSAPLG00000014547
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015179
115294669 - 115325850
31182
ENSAPLT00000039008
115295397 - 115328724
33328
ENSAPLT00000031559
115294669 - 115328724
34056