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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115338227_115340459_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
115338227 - 115340459
Intron Length:
2233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTGATATTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGTCTTTTGATA
Flanking Amino Acid:
PHINFTGNICVYCPGGPDSD
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74.7
41.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
79.9
0.67
0.9
73.9
40.6
Minor 5ss
41.3
-1
2.8
52.3
44.3
Minor BPS
60.9
0.34
1.2
67.53
32.3

Associated Gene:

Gene:
ELP3
Ensembl Gene ID:
ENSAPLG00000014280
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034136
115334990 - 115415415
80426
ENSAPLT00000028214
115334990 - 115412684
77695
ENSAPLT00000017944
115334990 - 115399319
64330
ENSAPLT00000040255
115334990 - 115404506
69517
ENSAPLT00000014919
115335578 - 115401394
65817
ENSAPLT00000039482
115334990 - 115407621
72632