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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115340524_115342146_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115340524 - 115342146
Intron Length:
1623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTAATT
5'SS Class:
major
3'SS Sequence:
TTGTGTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
YSTQSYTGYEPTSMRAIRAR
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
79.1
34.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.4
0.73
0.8
81.2
36.5
Minor 5ss
45.6
-0.5
2.9
66.8
44.1
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
ELP3
Ensembl Gene ID:
ENSAPLG00000014280
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034136
115334990 - 115415415
80426
ENSAPLT00000028214
115334990 - 115412684
77695
ENSAPLT00000017944
115334990 - 115399319
64330
ENSAPLT00000040255
115334990 - 115404506
69517
ENSAPLT00000014919
115335578 - 115401394
65817
ENSAPLT00000039482
115334990 - 115407621
72632