About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115343627_115361784_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
115343627 - 115361784
Intron Length:
18158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ACGCTTTTGATA
Flanking Amino Acid:
HTSNNVAEAVRYSERSLTKC
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
88.5
0.86
0.8
84
31
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
49.6
-0
1.1
52.27
33.9

Associated Gene:

Gene:
ELP3
Ensembl Gene ID:
ENSAPLG00000014280
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034136
115334990 - 115415415
80426
ENSAPLT00000028214
115334990 - 115412684
77695
ENSAPLT00000017944
115334990 - 115399319
64330
ENSAPLT00000040255
115334990 - 115404506
69517
ENSAPLT00000014919
115335578 - 115401394
65817
ENSAPLT00000039482
115334990 - 115407621
72632