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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115365175_115381473_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115365175 - 115381473
Intron Length:
16299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TCCACTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCACAT
U12 Branch Point Sequence:
TTCTCTCTGACT
Flanking Amino Acid:
GLERDTDQFVEFFENPAFRP
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
72.6
38.2
Major BPS
65.3
0.38
1.1
72.6
33.1
Major PPT
81.5
0.71
0.8
75.9
32.5
Minor 5ss
36.5
-1.5
2.9
48.4
41.7
Minor BPS
65.8
0.58
1.7
83.75
37.4

Associated Gene:

Gene:
ELP3
Ensembl Gene ID:
ENSAPLG00000014280
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028214
115334990 - 115412684
77695
ENSAPLT00000017944
115334990 - 115399319
64330
ENSAPLT00000040255
115334990 - 115404506
69517
ENSAPLT00000014919
115335578 - 115401394
65817
ENSAPLT00000039482
115334990 - 115407621
72632
ENSAPLT00000034136
115334990 - 115415415
80426