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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115381668_115386401_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
115381668 - 115386401
Intron Length:
4734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTAATGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTACTTTAATG
Flanking Amino Acid:
PPWTRVYRVQRDIPMPLVSS
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
75.1
36
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
75.4
0.57
1
69.7
40.3
Minor 5ss
40.6
-1
2.8
53.5
43.5
Minor BPS
75
0.65
1.3
75.87
36.2

Associated Gene:

Gene:
ELP3
Ensembl Gene ID:
ENSAPLG00000014280
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017944
115334990 - 115399319
64330
ENSAPLT00000040255
115334990 - 115404506
69517
ENSAPLT00000014919
115335578 - 115401394
65817
ENSAPLT00000039482
115334990 - 115407621
72632
ENSAPLT00000034136
115334990 - 115415415
80426
ENSAPLT00000028214
115334990 - 115412684
77695