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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115397900_115401314_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
115397900 - 115401314
Intron Length:
3415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTTTG
5'SS Class:
major
3'SS Sequence:
TTGCCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
TTTAAGGAAACT
Flanking Amino Acid:
HGSWKIAVISVTEVQNFLKV
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.2
69.9
43.4
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
85.2
0.79
0.8
80.4
31.6
Minor 5ss
48.3
-0.2
2.8
67
44.3
Minor BPS
39.7
-0.7
2.8
69.32
47.1

Associated Gene:

Gene:
ELP3
Ensembl Gene ID:
ENSAPLG00000014280
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014919
115335578 - 115401394
65817