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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115397900_115403429_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
115397900 - 115403429
Intron Length:
5530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTTTG
5'SS Class:
major
3'SS Sequence:
TCTTTGCTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CTTCTCAAAATT
Flanking Amino Acid:
HGSWKIAVISEIFNLQADKA
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.2
69.9
43.4
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
78.5
0.64
0.8
77.1
31.6
Minor 5ss
48.3
-0.2
2.8
67
44.3
Minor BPS
48.1
-0
1.9
69.5
41.9

Associated Gene:

Gene:
ELP3
Ensembl Gene ID:
ENSAPLG00000014280
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040255
115334990 - 115404506
69517