Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115397900_115407460_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

115397900 - 115407460

Intron Length:

9561

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCTTTG

5'SS Class:

major

3'SS Sequence:

ATTCCCTTTGAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTTTTATTC

Flanking Amino Acid:

HGSWKIAVISVQAFCHLSLR

Intron Amino Acid Position:

509

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.4

0.55

1.2

69.9

43.4

Major BPS

96.5

1.15

0.6

34.2

Major PPT

71.9

0.49

32.1

Minor 5ss

48.3

-0.2

2.8

44.3

Minor BPS

67.3

0.52

1.5

77.16

33.3

Associated Gene:

Gene:

ELP3

Ensembl Gene ID:

ENSAPLG00000014280

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039482

115334990 - 115407621

72632