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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115426471_115426562_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
115426471 - 115426562
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGGATC
5'SS Class:
major
3'SS Sequence:
GCTGTTCCCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TTTCTCCTAATT
Flanking Amino Acid:
RDGDTEKELLGFPEPENISL
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
73.3
37.5
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
67.9
0.4
0.9
62.2
34.8
Minor 5ss
31.9
-2.1
3.3
43.8
43.8
Minor BPS
67
0.61
1.6
85.92
33.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014279
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018468
115425316 - 115429234
3919