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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115454625_115454705_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115454625 - 115454705
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGGAA
5'SS Class:
major
3'SS Sequence:
CATCATCATCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
GTATCCTCATCC
Flanking Amino Acid:
EEDFYYTEVQQALAKPEALL
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
67.7
32.5
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
68.6
0.42
1
58.8
41.5
Minor 5ss
22.4
-3.2
3.3
28
44
Minor BPS
57.3
0.21
1.8
68.84
42.1

Associated Gene:

Gene:
ZNF395
Ensembl Gene ID:
ENSAPLG00000021341
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021622
115452160 - 115466106
13947