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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115457030_115458734_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115457030 - 115458734
Intron Length:
1705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACGTAAG
5'SS Class:
major
3'SS Sequence:
TTTCCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAC
U12 Branch Point Sequence:
GCACCAACAAAC
Flanking Amino Acid:
GHHQLCAGQQVLVTYSGQEF
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71.8
39.8
Major BPS
50.8
0.02
0.9
57
25.1
Major PPT
91.4
0.93
0.6
84.4
30.5
Minor 5ss
35.7
-1.6
2.9
41.9
39
Minor BPS
37.8
-0.9
1.9
42.17
36.8

Associated Gene:

Gene:
ZNF395
Ensembl Gene ID:
ENSAPLG00000021341
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046412
115450095 - 115466106
16012
ENSAPLT00000021622
115452160 - 115466106
13947