Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115458982_115465957_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

115458982 - 115465957

Intron Length:

6976

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCC|GTGAGTAGC

5'SS Class:

major

3'SS Sequence:

TCTCCTCCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGATAAC

U12 Branch Point Sequence:

TGGAGATAACCT

Flanking Amino Acid:

EEGGSHGPATPVAEMASVLS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.5

0.37

1.3

63.5

42.9

Major BPS

53.9

0.1

1.2

55.8

37.4

Major PPT

82.8

0.74

0.7

77.1

24.8

Minor 5ss

32.5

-2

2.7

41.4

38.2

Minor BPS

37.3

-0.8

2.3

54.24

46.8

Associated Gene:

Gene:

ZNF395

Ensembl Gene ID:

ENSAPLG00000021341

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046412

115450095 - 115466106

16012

ENSAPLT00000021622

115452160 - 115466106

13947