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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115473645_115474223_F

Intron Information:

Intron Rank:
144208
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
115473645 - 115474223
Intron Length:
579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTGAGCGAG
5'SS Class:
weak_major
3'SS Sequence:
TTGTTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TGTTTGCTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.7
0.18
1.3
50.6
42.4
Major BPS
80
0.75
1
78.6
31
Major PPT
85.7
0.8
0.8
77.7
36.7
Minor 5ss
32.1
-2
3.3
41.9
45.2
Minor BPS
43.8
-0.3
2.4
68.65
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027754
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035335
115473582 - 115479332
5751