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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115498966_115499508_R

Intron Information:

Intron Rank:
150128
Intron Class:
major
Intron Phase:
Intron Coordinates:
115498966 - 115499508
Intron Length:
543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATGTTGC
5'SS Class:
major
3'SS Sequence:
CTATCTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTATCTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
65.8
41.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
77
0.61
0.9
73.1
35.8
Minor 5ss
46.2
-0.4
2.5
52.5
44.7
Minor BPS
79.3
0.92
1.1
79.94
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028341
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039087
115497896 - 115499822
1927