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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11552585_11553278_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
11552585 - 11553278
Intron Length:
694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTACTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATATTTTGAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
88.7
25.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
88.6
0.87
0.7
84.4
30.2
Minor 5ss
43.5
-0.7
2.6
59.2
45.4
Minor BPS
57.5
0.31
1.5
73.22
37.1

Associated Gene:

Gene:
GPCPD1
Ensembl Gene ID:
ENSAPLG00000008381
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008749
11552521 - 11593367
40847