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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11553440_11558709_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
11553440 - 11558709
Intron Length:
5270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTAAAG
5'SS Class:
major
3'SS Sequence:
CCCCCCACTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TTTCCCCCCACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
66.2
39.1
Major BPS
69.6
0.49
1
59.5
39
Major PPT
64.9
0.34
0.8
57.6
25.2
Minor 5ss
39
-1.2
2.8
48.6
47.2
Minor BPS
48.8
-0
2.3
78.94
42.7

Associated Gene:

Gene:
GPCPD1
Ensembl Gene ID:
ENSAPLG00000008381
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045315
11553279 - 11594197
40919
ENSAPLT00000008749
11552521 - 11593367
40847