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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115596690_115600884_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
115596690 - 115600884
Intron Length:
4195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
ATTTGTTTATTT
Flanking Amino Acid:
RKGSPCDTAQSNEKRRREQE
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
76.4
39.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
84.5
0.78
0.8
80.4
31.6
Minor 5ss
35.2
-1.7
3.5
48.8
47.4
Minor BPS
56
0.27
2
77.64
39.7

Associated Gene:

Gene:
NCOA1
Ensembl Gene ID:
ENSAPLG00000013551
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014179
115596604 - 115652068
55465